Decay times in turnover statistics of single enzymes.
نویسنده
چکیده
The first passage times for enzymatic turnovers in nonequilibrium steady state display a statistical symmetry property related to nonequilibrium fluctuation theorems, which makes it possible to extract the chemical driving force from single molecule trajectories in nonequilibrium steady state. Below, we show that the number of decay constants needed to describe the first passage time distribution of this system is not equal to the number of states in the first passage problem, as one would generally expect. Instead, the structure of the kinetic mechanism makes half of the decay times vanish identically from the turnover time distribution. The terms that cancel out correspond to the eigenvalues of a certain submatrix of the master equation matrix for the first exit time problem. We discuss how these results make modeling and data analysis easier for such systems, and how the turnovers can be measured.
منابع مشابه
Simulated patterns of litter decay predict patterns of extracellular enzyme activities
Decomposition is a complex suite of processes that strongly affects the mineralization and immobilization of mineral nutrients. Thus, considerable research has focused on gaining a mechanistic understanding of litter decay. Models of decay vary with respect to detail, but most utilize decay rate coefficients for particular chemical constituents of litter, derived from empirical observations of ...
متن کاملRelationship between job satisfaction, absence from work and turnover among nurses
Background and Purpose: Absence from work, quitting job and turnover of nursing staff put a great burden on any health care system in terms of hiring, training and maintaining nurses. Studies suggest that those with higher job satisfaction are less likely to state being sick and indicate that there is a relationship between the nurses’ job satisfaction and their tendency to quit or ask for a...
متن کاملTheory of the statistics of kinetic transitions with application to single-molecule enzyme catalysis.
Single-molecule spectroscopy can monitor transitions between two microscopic states when these transitions are associated with the emission of photons. A general formalism is developed for obtaining the statistics of such transitions from a microscopic model when the dynamics is described by master or rate equations or their continuum analog, multidimensional reaction-diffusion equations. The f...
متن کاملSingle Turnover Measurements of Nanoparticle Catalysis Analyzed with Dwell Time Correlation Functions and Constrained Mean Dwell Times
Single turnover measurements of a fluorogenic reaction at the surface of a nanoparticle provide a detailed view of reaction dynamics at a catalyst with multiple heterogeneous active sites. This picture must be extracted from a fluorescence trajectory of one particle, which records individual reaction and desorption events. We have previously proposed analyzing fluorescence trajectories with con...
متن کاملLight-initiated hydroxylation of lauric acid using hybrid P450 BM3 enzymes.
We have developed hybrid P450 BM3 enzymes consisting of a Ru(II)-diimine photosensitizer covalently attached to non-native single cysteine residues of P450 BM3 heme domain mutants. These enzymes are capable, upon light activation, of selectively hydroxylating lauric acid with 40 times higher total turnover numbers compared to the peroxide shunt.
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Physical review. E, Statistical, nonlinear, and soft matter physics
دوره 78 1 Pt 1 شماره
صفحات -
تاریخ انتشار 2008